J4_6OPE_007

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OPE_007 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0854

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6OPE|1|RA|C|297
6OPE|1|RA|G|298
6OPE|1|RA|A|299
6OPE|1|RA|A|300
6OPE|1|RA|G|301
*
6OPE|1|RA|C|316
6OPE|1|RA|G|317
6OPE|1|RA|C|318
6OPE|1|RA|C|319
*
6OPE|1|RA|G|323
6OPE|1|RA|A|324
6OPE|1|RA|G|325
*
6OPE|1|RA|C|337
6OPE|1|RA|G|338
6OPE|1|RA|U|339
6OPE|1|RA|A|340
6OPE|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24