J4_6OPE_032
3D structure
- PDB id
- 6OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUAG*CGCU*AGAGGUCAGC*GCUUA
- Length
- 24 nucleotides
- Bulged bases
- 6OPE|1|QY|U|8, 6OPE|1|QY|U|47, 6OPE|1|QY|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OPE|1|QY|U|6
6OPE|1|QY|A|7
6OPE|1|QY|U|8
6OPE|1|QY|A|9
6OPE|1|QY|G|10
*
6OPE|1|QY|C|25
6OPE|1|QY|G|26
6OPE|1|QY|C|27
6OPE|1|QY|U|28
*
6OPE|1|QY|A|42
6OPE|1|QY|G|43
6OPE|1|QY|A|44
6OPE|1|QY|G|45
6OPE|1|QY|G|46
6OPE|1|QY|U|47
6OPE|1|QY|C|48
6OPE|1|QY|A|49
6OPE|1|QY|G|50
6OPE|1|QY|C|51
*
6OPE|1|QY|G|63
6OPE|1|QY|C|64
6OPE|1|QY|U|65
6OPE|1|QY|U|66
6OPE|1|QY|A|67
Current chains
- Chain QY
- A-site tRNAAla(GGC) U32-A38
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QM
- 30S ribosomal protein S13
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RQ
- 50S ribosomal protein L16
- Chain RZ
- 50S ribosomal protein L25
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