J4_6ORD_005

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAUAG*CGC*GAGGUCAGC*GCUUA

Length

22 nucleotides

Bulged bases

6ORD|1|QY|U|8, 6ORD|1|QY|U|47, 6ORD|1|QY|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ORD|1|QY|U|6
6ORD|1|QY|A|7
6ORD|1|QY|U|8
6ORD|1|QY|A|9
6ORD|1|QY|G|10
*
6ORD|1|QY|C|25
6ORD|1|QY|G|26
6ORD|1|QY|C|27
*
6ORD|1|QY|G|43
6ORD|1|QY|A|44
6ORD|1|QY|G|45
6ORD|1|QY|G|46
6ORD|1|QY|U|47
6ORD|1|QY|C|48
6ORD|1|QY|A|49
6ORD|1|QY|G|50
6ORD|1|QY|C|51
*
6ORD|1|QY|G|63
6ORD|1|QY|C|64
6ORD|1|QY|U|65
6ORD|1|QY|U|66
6ORD|1|QY|A|67

Current chains

Chain QY

A-site tRNAAla(GGC) U32-A38

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RQ

50S ribosomal protein L16