3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
6ORD|1|RA|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ORD_013 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0675
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6ORD|1|RA|U|1833
6ORD|1|RA|U|1834
6ORD|1|RA|G|1835
*
6ORD|1|RA|C|1905
6ORD|1|RA|G|1906
*
6ORD|1|RA|C|1924
6ORD|1|RA|C|1925
6ORD|1|RA|U|1926
6ORD|1|RA|A|1927
6ORD|1|RA|A|1928
6ORD|1|RA|G|1929
6ORD|1|RA|G|1930
6ORD|1|RA|U|1931
6ORD|1|RA|A|1932
6ORD|1|RA|G|1933
*
6ORD|1|RA|C|1967
6ORD|1|RA|G|1968
6ORD|1|RA|A|1969
6ORD|1|RA|A|1970
6ORD|1|RA|A|1971
6ORD|1|RA|A|1972

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain QV
Transfer RNA; tRNA
Chain RD
50S ribosomal protein L2

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