J4_6ORD_032

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAUAG*CGC*GAGGUCA*UUA

Length

18 nucleotides

Bulged bases

6ORD|1|XY|U|8, 6ORD|1|XY|U|47, 6ORD|1|XY|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORD_032 not in the Motif Atlas

Homologous match to J4_6ORD_031

Geometric discrepancy: 0.0358

The information below is about J4_6ORD_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_97835.1

Basepair signature

cWW-F-F-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ORD|1|XY|U|6
6ORD|1|XY|A|7
6ORD|1|XY|U|8
6ORD|1|XY|A|9
6ORD|1|XY|G|10
*
6ORD|1|XY|C|25
6ORD|1|XY|G|26
6ORD|1|XY|C|27
*
6ORD|1|XY|G|43
6ORD|1|XY|A|44
6ORD|1|XY|G|45
6ORD|1|XY|G|46
6ORD|1|XY|U|47
6ORD|1|XY|C|48
6ORD|1|XY|A|49
*
6ORD|1|XY|U|65
6ORD|1|XY|U|66
6ORD|1|XY|A|67

Current chains

Chain XY

A-site tRNAAla(GGC) U32-A38

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA