J4_6ORE_005

3D structure

PDB id

6ORE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release complex 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6ORE|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORE_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0728

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6ORE|1|1|G|1310
6ORE|1|1|G|1311
6ORE|1|1|U|1312
6ORE|1|1|U|1313
6ORE|1|1|C|1314
*
6ORE|1|1|G|1338
6ORE|1|1|G|1339
6ORE|1|1|U|1340
6ORE|1|1|G|1341
6ORE|1|1|A|1342
6ORE|1|1|G|1343
*
6ORE|1|1|C|1404
6ORE|1|1|U|1405
*
6ORE|1|1|A|1597
6ORE|1|1|A|1598
6ORE|1|1|U|1599
6ORE|1|1|C|1600
6ORE|1|1|G|1601
6ORE|1|1|U|1602
6ORE|1|1|A|1603
6ORE|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34