J4_6ORE_014
3D structure
- PDB id
- 6ORE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Release complex 70S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GU(4SU)G*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6ORE|1|5|U|7, 6ORE|1|5|U|47, 6ORE|1|5|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ORE_014 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.1786
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6ORE|1|5|G|6
6ORE|1|5|U|7
6ORE|1|5|4SU|8
6ORE|1|5|G|9
*
6ORE|1|5|C|25
6ORE|1|5|G|26
6ORE|1|5|U|27
*
6ORE|1|5|A|43
6ORE|1|5|A|44
6ORE|1|5|G|45
6ORE|1|5|A|46
6ORE|1|5|U|47
6ORE|1|5|C|48
6ORE|1|5|G|49
*
6ORE|1|5|C|65
6ORE|1|5|C|66
Current chains
- Chain 5
- P-tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain r
- 30S ribosomal protein S13
Coloring options: