J4_6ORL_002

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORL_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1049

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6ORL|1|1|G|297
6ORL|1|1|G|298
6ORL|1|1|A|299
6ORL|1|1|A|300
6ORL|1|1|G|301
*
6ORL|1|1|C|316
6ORL|1|1|G|317
6ORL|1|1|C|318
6ORL|1|1|G|319
*
6ORL|1|1|C|323
6ORL|1|1|A|324
6ORL|1|1|G|325
*
6ORL|1|1|C|337
6ORL|1|1|G|338
6ORL|1|1|U|339
6ORL|1|1|A|340
6ORL|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24