J4_6ORL_005

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6ORL|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORL_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1151

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6ORL|1|1|G|1310
6ORL|1|1|G|1311
6ORL|1|1|U|1312
6ORL|1|1|U|1313
6ORL|1|1|C|1314
*
6ORL|1|1|G|1338
6ORL|1|1|G|1339
6ORL|1|1|U|1340
6ORL|1|1|G|1341
6ORL|1|1|A|1342
6ORL|1|1|G|1343
*
6ORL|1|1|C|1404
6ORL|1|1|U|1405
*
6ORL|1|1|A|1597
6ORL|1|1|A|1598
6ORL|1|1|U|1599
6ORL|1|1|C|1600
6ORL|1|1|G|1601
6ORL|1|1|U|1602
6ORL|1|1|A|1603
6ORL|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34