J4_6OSI_007

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSI_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0976

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6OSI|1|RA|C|297
6OSI|1|RA|G|298
6OSI|1|RA|A|299
6OSI|1|RA|A|300
6OSI|1|RA|G|301
*
6OSI|1|RA|C|316
6OSI|1|RA|G|317
6OSI|1|RA|C|318
6OSI|1|RA|C|319
*
6OSI|1|RA|G|323
6OSI|1|RA|A|324
6OSI|1|RA|G|325
*
6OSI|1|RA|C|337
6OSI|1|RA|G|338
6OSI|1|RA|U|339
6OSI|1|RA|A|340
6OSI|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24