J4_6OSI_013

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6OSI|1|RA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSI_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1925

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6OSI|1|RA|U|1833
6OSI|1|RA|U|1834
6OSI|1|RA|G|1835
*
6OSI|1|RA|C|1905
6OSI|1|RA|G|1906
*
6OSI|1|RA|C|1924
6OSI|1|RA|C|1925
6OSI|1|RA|U|1926
6OSI|1|RA|A|1927
6OSI|1|RA|A|1928
6OSI|1|RA|G|1929
6OSI|1|RA|G|1930
6OSI|1|RA|U|1931
6OSI|1|RA|A|1932
6OSI|1|RA|G|1933
*
6OSI|1|RA|C|1967
6OSI|1|RA|G|1968
6OSI|1|RA|A|1969
6OSI|1|RA|A|1970
6OSI|1|RA|A|1971
6OSI|1|RA|A|1972

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2