Loop J4_6OSI

3D structure

PDB id: 6OSI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)
Experimental method: X-RAY DIFFRACTION
Resolution: 4.14 Å

Loop

Sequence: UGGAGC*GCUACAAUGC*GCCCAGUUCGGAUUGGG*CCCAUGAAGCCGGAA
Length: 48 nucleotides
Bulged bases: 6OSI|1|XA|U|1240, 6OSI|1|XA|U|1302, 6OSI|1|XA|C|1336
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OSI|1|XA|U|943
6OSI|1|XA|G|944
6OSI|1|XA|G|945
6OSI|1|XA|A|946
6OSI|1|XA|G|947
6OSI|1|XA|C|948
*
6OSI|1|XA|G|1233
6OSI|1|XA|C|1234
6OSI|1|XA|U|1235
6OSI|1|XA|A|1236
6OSI|1|XA|C|1237
6OSI|1|XA|A|1238
6OSI|1|XA|A|1239
6OSI|1|XA|U|1240
6OSI|1|XA|G|1241
6OSI|1|XA|C|1242
*
6OSI|1|XA|G|1295
6OSI|1|XA|C|1296
6OSI|1|XA|C|1297
6OSI|1|XA|C|1298
6OSI|1|XA|A|1299
6OSI|1|XA|G|1300
6OSI|1|XA|U|1301
6OSI|1|XA|U|1302
6OSI|1|XA|C|1303
6OSI|1|XA|G|1304
6OSI|1|XA|G|1305
6OSI|1|XA|A|1306
6OSI|1|XA|U|1307
6OSI|1|XA|U|1308
6OSI|1|XA|G|1309
6OSI|1|XA|G|1310
6OSI|1|XA|G|1311
*
6OSI|1|XA|C|1326
6OSI|1|XA|C|1327
6OSI|1|XA|C|1328
6OSI|1|XA|A|1329
6OSI|1|XA|U|1330
6OSI|1|XA|G|1331
6OSI|1|XA|A|1332
6OSI|1|XA|A|1333
6OSI|1|XA|G|1334
6OSI|1|XA|C|1335
6OSI|1|XA|C|1336
6OSI|1|XA|G|1337
6OSI|1|XA|G|1338
6OSI|1|XA|A|1339
6OSI|1|XA|A|1340

Current chains

Chain XA: 16S rRNA

Nearby chains

Chain XG: 30S ribosomal protein S7
Chain XM: 30S ribosomal protein S13
Chain XS: 30S ribosomal protein S19
Chain XU: 30S ribosomal protein Thx
Chain XV: Transfer RNA; tRNA

J4_6OSI_019