J4_6OSK_016

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6OSK|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSK_016 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1041

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6OSK|1|1|G|1310
6OSK|1|1|G|1311
6OSK|1|1|U|1312
6OSK|1|1|U|1313
6OSK|1|1|C|1314
*
6OSK|1|1|G|1338
6OSK|1|1|G|1339
6OSK|1|1|U|1340
6OSK|1|1|G|1341
6OSK|1|1|A|1342
6OSK|1|1|G|1343
*
6OSK|1|1|C|1404
6OSK|1|1|U|1405
*
6OSK|1|1|A|1597
6OSK|1|1|A|1598
6OSK|1|1|U|1599
6OSK|1|1|C|1600
6OSK|1|1|G|1601
6OSK|1|1|U|1602
6OSK|1|1|A|1603
6OSK|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34