J4_6OSK_018

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*UU*ACGAG*UGAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSK_018 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.3406

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6OSK|1|1|G|1444
6OSK|1|1|G|1445
*
6OSK|1|1|U|1466
6OSK|1|1|U|1467
*
6OSK|1|1|A|1525
6OSK|1|1|C|1526
6OSK|1|1|G|1527
6OSK|1|1|A|1528
6OSK|1|1|G|1529
*
6OSK|1|1|U|1542
6OSK|1|1|G|1543
6OSK|1|1|A|1544
6OSK|1|1|A|1545
6OSK|1|1|G|1546
6OSK|1|1|C|1547

Current chains

Chain 1

23S ribosomal RNA

Nearby chains