J4_6OSQ_002

3D structure

PDB id

6OSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated state bound Release complex 70S at long incubation time point

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSQ_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0847

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6OSQ|1|1|G|297
6OSQ|1|1|G|298
6OSQ|1|1|A|299
6OSQ|1|1|A|300
6OSQ|1|1|G|301
*
6OSQ|1|1|C|316
6OSQ|1|1|G|317
6OSQ|1|1|C|318
6OSQ|1|1|G|319
*
6OSQ|1|1|C|323
6OSQ|1|1|A|324
6OSQ|1|1|G|325
*
6OSQ|1|1|C|337
6OSQ|1|1|G|338
6OSQ|1|1|U|339
6OSQ|1|1|A|340
6OSQ|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24