J4_6OSQ_017

3D structure

PDB id

6OSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated state bound Release complex 70S at long incubation time point

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6OSQ|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSQ_017 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1038

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6OSQ|1|1|G|1310
6OSQ|1|1|G|1311
6OSQ|1|1|U|1312
6OSQ|1|1|U|1313
6OSQ|1|1|C|1314
*
6OSQ|1|1|G|1338
6OSQ|1|1|G|1339
6OSQ|1|1|U|1340
6OSQ|1|1|G|1341
6OSQ|1|1|A|1342
6OSQ|1|1|G|1343
*
6OSQ|1|1|C|1404
6OSQ|1|1|U|1405
*
6OSQ|1|1|A|1597
6OSQ|1|1|A|1598
6OSQ|1|1|U|1599
6OSQ|1|1|C|1600
6OSQ|1|1|G|1601
6OSQ|1|1|U|1602
6OSQ|1|1|A|1603
6OSQ|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34