J4_6OT3_002

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OT3_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0976

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6OT3|1|1|G|297
6OT3|1|1|G|298
6OT3|1|1|A|299
6OT3|1|1|A|300
6OT3|1|1|G|301
*
6OT3|1|1|C|316
6OT3|1|1|G|317
6OT3|1|1|C|318
6OT3|1|1|G|319
*
6OT3|1|1|C|323
6OT3|1|1|A|324
6OT3|1|1|G|325
*
6OT3|1|1|C|337
6OT3|1|1|G|338
6OT3|1|1|U|339
6OT3|1|1|A|340
6OT3|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24