3D structure

PDB id
6OT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound Release complex 70S at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
6OT3|1|1|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OT3_003 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.2514
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

6OT3|1|1|C|601
6OT3|1|1|A|602
6OT3|1|1|A|603
6OT3|1|1|G|604
*
6OT3|1|1|C|624
6OT3|1|1|G|625
6OT3|1|1|A|626
6OT3|1|1|A|627
6OT3|1|1|G|628
*
6OT3|1|1|C|635
6OT3|1|1|G|636
6OT3|1|1|A|637
6OT3|1|1|G|638
*
6OT3|1|1|C|650
6OT3|1|1|G|651
6OT3|1|1|U|652
6OT3|1|1|U|653
6OT3|1|1|A|654
6OT3|1|1|A|655
6OT3|1|1|G|656

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain e
50S ribosomal protein L35

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1905 s