3D structure

PDB id
6OT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound Release complex 70S at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
6OT3|1|1|U|1971
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OT3_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1097
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6OT3|1|1|C|1833
6OT3|1|1|U|1834
6OT3|1|1|2MG|1835
*
6OT3|1|1|C|1905
6OT3|1|1|G|1906
*
6OT3|1|1|C|1924
6OT3|1|1|C|1925
6OT3|1|1|U|1926
6OT3|1|1|A|1927
6OT3|1|1|A|1928
6OT3|1|1|G|1929
6OT3|1|1|G|1930
6OT3|1|1|U|1931
6OT3|1|1|A|1932
6OT3|1|1|G|1933
*
6OT3|1|1|C|1967
6OT3|1|1|G|1968
6OT3|1|1|A|1969
6OT3|1|1|A|1970
6OT3|1|1|U|1971
6OT3|1|1|G|1972

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain 5
Transfer RNA; tRNA
Chain B
50S ribosomal protein L2

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