J4_6OTR_007

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OTR_007 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0755

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6OTR|1|RA|C|297
6OTR|1|RA|G|298
6OTR|1|RA|A|299
6OTR|1|RA|A|300
6OTR|1|RA|G|301
*
6OTR|1|RA|C|316
6OTR|1|RA|G|317
6OTR|1|RA|C|318
6OTR|1|RA|C|319
*
6OTR|1|RA|G|323
6OTR|1|RA|A|324
6OTR|1|RA|G|325
*
6OTR|1|RA|C|337
6OTR|1|RA|G|338
6OTR|1|RA|U|339
6OTR|1|RA|A|340
6OTR|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24