J4_6OTR_028
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6OTR|1|YA|A|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OTR_028 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0698
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6OTR|1|YA|U|1833
6OTR|1|YA|U|1834
6OTR|1|YA|G|1835
*
6OTR|1|YA|C|1905
6OTR|1|YA|G|1906
*
6OTR|1|YA|C|1924
6OTR|1|YA|C|1925
6OTR|1|YA|U|1926
6OTR|1|YA|A|1927
6OTR|1|YA|A|1928
6OTR|1|YA|G|1929
6OTR|1|YA|G|1930
6OTR|1|YA|U|1931
6OTR|1|YA|A|1932
6OTR|1|YA|G|1933
*
6OTR|1|YA|C|1967
6OTR|1|YA|G|1968
6OTR|1|YA|A|1969
6OTR|1|YA|A|1970
6OTR|1|YA|A|1971
6OTR|1|YA|A|1972
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XV
- Transfer RNA; tRNA
- Chain YD
- 50S ribosomal protein L2
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