J4_6OTR_031
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6OTR|1|XW|U|47, 6OTR|1|XW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OTR_031 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.2731
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6OTR|1|XW|G|7
6OTR|1|XW|U|8
6OTR|1|XW|G|9
6OTR|1|XW|G|10
*
6OTR|1|XW|C|25
6OTR|1|XW|G|26
6OTR|1|XW|U|27
*
6OTR|1|XW|A|43
6OTR|1|XW|A|44
6OTR|1|XW|G|45
6OTR|1|XW|G|46
6OTR|1|XW|U|47
6OTR|1|XW|C|48
6OTR|1|XW|G|49
*
6OTR|1|XW|C|65
6OTR|1|XW|C|66
Current chains
- Chain XW
- tRNA-fMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XG
- 30S ribosomal protein S7
- Chain XK
- 30S ribosomal protein S11
- Chain Y6
- 50S ribosomal protein L33
Coloring options: