J4_6OUO_002

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OUO_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0976

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6OUO|1|1|G|297
6OUO|1|1|G|298
6OUO|1|1|A|299
6OUO|1|1|A|300
6OUO|1|1|G|301
*
6OUO|1|1|C|316
6OUO|1|1|G|317
6OUO|1|1|C|318
6OUO|1|1|G|319
*
6OUO|1|1|C|323
6OUO|1|1|A|324
6OUO|1|1|G|325
*
6OUO|1|1|C|337
6OUO|1|1|G|338
6OUO|1|1|U|339
6OUO|1|1|A|340
6OUO|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24