J4_6OXA_007

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OXA_007 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0765

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6OXA|1|RA|C|297
6OXA|1|RA|G|298
6OXA|1|RA|A|299
6OXA|1|RA|A|300
6OXA|1|RA|G|301
*
6OXA|1|RA|C|316
6OXA|1|RA|G|317
6OXA|1|RA|C|318
6OXA|1|RA|C|319
*
6OXA|1|RA|G|323
6OXA|1|RA|A|324
6OXA|1|RA|G|325
*
6OXA|1|RA|C|337
6OXA|1|RA|G|338
6OXA|1|RA|U|339
6OXA|1|RA|A|340
6OXA|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24