J4_6OXA_019

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

6OXA|1|XV|U|8, 6OXA|1|XV|U|47, 6OXA|1|XV|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OXA_019 not in the Motif Atlas

Homologous match to J4_9DFC_015

Geometric discrepancy: 0.1832

The information below is about J4_9DFC_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

6OXA|1|XV|G|7
6OXA|1|XV|U|8
6OXA|1|XV|G|9
6OXA|1|XV|G|10
*
6OXA|1|XV|C|25
6OXA|1|XV|G|26
6OXA|1|XV|U|27
*
6OXA|1|XV|A|43
6OXA|1|XV|A|44
6OXA|1|XV|G|45
6OXA|1|XV|G|46
6OXA|1|XV|U|47
6OXA|1|XV|C|48
6OXA|1|XV|G|49
*
6OXA|1|XV|C|65
6OXA|1|XV|C|66

Current chains

Chain XV

P-site tRNA-fMet

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain XM

30S ribosomal protein S13

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YQ

50S ribosomal protein L16