J4_6OXA_031

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

6OXA|1|XW|U|47, 6OXA|1|XW|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OXA_031 not in the Motif Atlas

Homologous match to J4_6UGG_002

Geometric discrepancy: 0.2719

The information below is about J4_6UGG_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

6OXA|1|XW|G|7
6OXA|1|XW|U|8
6OXA|1|XW|G|9
6OXA|1|XW|G|10
*
6OXA|1|XW|C|25
6OXA|1|XW|G|26
6OXA|1|XW|U|27
*
6OXA|1|XW|A|43
6OXA|1|XW|A|44
6OXA|1|XW|G|45
6OXA|1|XW|G|46
6OXA|1|XW|U|47
6OXA|1|XW|C|48
6OXA|1|XW|G|49
*
6OXA|1|XW|C|65
6OXA|1|XW|C|66

Current chains

Chain XW

P-site tRNA-fMet

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XK

30S ribosomal protein S11

Chain Y6

50S ribosomal protein L33