J4_6OXI_018
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6OXI|1|XV|U|8, 6OXI|1|XV|U|47, 6OXI|1|XV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OXI_018 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.1626
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6OXI|1|XV|G|7
6OXI|1|XV|U|8
6OXI|1|XV|G|9
6OXI|1|XV|G|10
*
6OXI|1|XV|C|25
6OXI|1|XV|G|26
6OXI|1|XV|U|27
*
6OXI|1|XV|A|43
6OXI|1|XV|A|44
6OXI|1|XV|G|45
6OXI|1|XV|G|46
6OXI|1|XV|U|47
6OXI|1|XV|C|48
6OXI|1|XV|G|49
*
6OXI|1|XV|C|65
6OXI|1|XV|C|66
Current chains
- Chain XV
- P-site tRNA-fMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XM
- 30S ribosomal protein S13
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
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