J4_6P4G_001

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

6P4G|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6P4G_001 not in the Motif Atlas

Homologous match to J4_8C3A_021

Geometric discrepancy: 0.1622

The information below is about J4_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78231.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6P4G|1|2|C|98
6P4G|1|2|A|99
6P4G|1|2|U|100
6P4G|1|2|U|101
6P4G|1|2|A|102
6P4G|1|2|A|103
6P4G|1|2|A|104
6P4G|1|2|U|105
6P4G|1|2|C|106
*
6P4G|1|2|G|355
6P4G|1|2|C|356
6P4G|1|2|C|357
*
6P4G|1|2|G|405
6P4G|1|2|U|406
6P4G|1|2|G|407
6P4G|1|2|A|408
6P4G|1|2|C|409
*
6P4G|1|2|G|431
6P4G|1|2|G|432

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8

Chain M

uS17

Chain Y

uS12