J4_6P5I_003

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGA*UACACUG*CGUGAUGG*CGAGGAA

Length

26 nucleotides

Bulged bases

6P5I|1|2|U|1535, 6P5I|1|2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|2|U|1225
6P5I|1|2|G|1226
6P5I|1|2|G|1227
6P5I|1|2|A|1228
*
6P5I|1|2|U|1530
6P5I|1|2|A|1531
6P5I|1|2|C|1532
6P5I|1|2|A|1533
6P5I|1|2|C|1534
6P5I|1|2|U|1535
6P5I|1|2|G|1536
*
6P5I|1|2|C|1597
6P5I|1|2|G|1598
6P5I|1|2|U|1599
6P5I|1|2|G|1600
6P5I|1|2|A|1601
6P5I|1|2|U|1602
6P5I|1|2|G|1603
6P5I|1|2|G|1604
*
6P5I|1|2|C|1635
6P5I|1|2|G|1636
6P5I|1|2|A|1637
6P5I|1|2|G|1638
6P5I|1|2|G|1639
6P5I|1|2|A|1640
6P5I|1|2|A|1641

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain T

uS13

Chain U

eS19

Chain a

eS25