J4_6P5I_011
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6P5I|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6P5I_011 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0817
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5I|1|5|C|3696
6P5I|1|5|U|3697
6P5I|1|5|G|3698
*
6P5I|1|5|C|3752
6P5I|1|5|G|3753
*
6P5I|1|5|C|3771
6P5I|1|5|U|3772
6P5I|1|5|U|3773
6P5I|1|5|A|3774
6P5I|1|5|A|3775
6P5I|1|5|G|3776
6P5I|1|5|G|3777
6P5I|1|5|U|3778
6P5I|1|5|A|3779
6P5I|1|5|G|3780
*
6P5I|1|5|U|3814
6P5I|1|5|G|3815
6P5I|1|5|A|3816
6P5I|1|5|A|3817
6P5I|1|5|U|3818
6P5I|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AA
- uL2
- Chain An
- eL41
Coloring options: