J4_6P5N_005
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GAGGGAG*UGUCGCCG*CACGGGG
- Length
- 24 nucleotides
- Bulged bases
- 6P5N|1|5|G|959, 6P5N|1|5|U|973, 6P5N|1|5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5N|1|5|C|712
6P5N|1|5|C|713
*
6P5N|1|5|G|955
6P5N|1|5|A|956
6P5N|1|5|G|957
6P5N|1|5|G|958
6P5N|1|5|G|959
6P5N|1|5|A|960
6P5N|1|5|G|961
*
6P5N|1|5|U|971
6P5N|1|5|G|972
6P5N|1|5|U|973
6P5N|1|5|C|974
6P5N|1|5|G|975
6P5N|1|5|C|976
6P5N|1|5|C|977
6P5N|1|5|G|978
*
6P5N|1|5|C|1278
6P5N|1|5|A|1279
6P5N|1|5|C|1280
6P5N|1|5|G|1281
6P5N|1|5|G|1282
6P5N|1|5|G|1283
6P5N|1|5|G|1284
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AC
- uL4
- Chain AE
- eL6
- Chain AF
- L30
- Chain Ae
- eL32
Coloring options: