J4_6PC5_002

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC5_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0644

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6PC5|1|I|G|297
6PC5|1|I|G|298
6PC5|1|I|A|299
6PC5|1|I|A|300
6PC5|1|I|G|301
*
6PC5|1|I|C|316
6PC5|1|I|G|317
6PC5|1|I|C|318
6PC5|1|I|G|319
*
6PC5|1|I|C|323
6PC5|1|I|A|324
6PC5|1|I|G|325
*
6PC5|1|I|C|337
6PC5|1|I|G|338
6PC5|1|I|U|339
6PC5|1|I|A|340
6PC5|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4