J4_6PC5_005

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6PC5|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC5_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0728

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PC5|1|I|G|1310
6PC5|1|I|G|1311
6PC5|1|I|U|1312
6PC5|1|I|U|1313
6PC5|1|I|C|1314
*
6PC5|1|I|G|1338
6PC5|1|I|G|1339
6PC5|1|I|U|1340
6PC5|1|I|G|1341
6PC5|1|I|A|1342
6PC5|1|I|G|1343
*
6PC5|1|I|C|1404
6PC5|1|I|U|1405
*
6PC5|1|I|A|1597
6PC5|1|I|A|1598
6PC5|1|I|U|1599
6PC5|1|I|C|1600
6PC5|1|I|G|1601
6PC5|1|I|U|1602
6PC5|1|I|A|1603
6PC5|1|I|C|1604

Current chains

Chain I

23S ribosomal RNA

Nearby chains