J4_6PC5_009

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6PC5|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC5_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1357

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6PC5|1|I|C|1833
6PC5|1|I|U|1834
6PC5|1|I|2MG|1835
*
6PC5|1|I|C|1905
6PC5|1|I|G|1906
*
6PC5|1|I|C|1924
6PC5|1|I|C|1925
6PC5|1|I|U|1926
6PC5|1|I|A|1927
6PC5|1|I|A|1928
6PC5|1|I|G|1929
6PC5|1|I|G|1930
6PC5|1|I|U|1931
6PC5|1|I|A|1932
6PC5|1|I|G|1933
*
6PC5|1|I|C|1967
6PC5|1|I|G|1968
6PC5|1|I|A|1969
6PC5|1|I|A|1970
6PC5|1|I|U|1971
6PC5|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2