J4_6PC6_009

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6PC6|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC6_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1333

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6PC6|1|I|C|1833
6PC6|1|I|U|1834
6PC6|1|I|2MG|1835
*
6PC6|1|I|C|1905
6PC6|1|I|G|1906
*
6PC6|1|I|C|1924
6PC6|1|I|C|1925
6PC6|1|I|U|1926
6PC6|1|I|A|1927
6PC6|1|I|A|1928
6PC6|1|I|G|1929
6PC6|1|I|G|1930
6PC6|1|I|U|1931
6PC6|1|I|A|1932
6PC6|1|I|G|1933
*
6PC6|1|I|C|1967
6PC6|1|I|G|1968
6PC6|1|I|A|1969
6PC6|1|I|A|1970
6PC6|1|I|U|1971
6PC6|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2