J4_6PC7_009

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6PC7|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC7_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1466

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6PC7|1|I|C|1833
6PC7|1|I|U|1834
6PC7|1|I|2MG|1835
*
6PC7|1|I|C|1905
6PC7|1|I|G|1906
*
6PC7|1|I|C|1924
6PC7|1|I|C|1925
6PC7|1|I|U|1926
6PC7|1|I|A|1927
6PC7|1|I|A|1928
6PC7|1|I|G|1929
6PC7|1|I|G|1930
6PC7|1|I|U|1931
6PC7|1|I|A|1932
6PC7|1|I|G|1933
*
6PC7|1|I|C|1967
6PC7|1|I|G|1968
6PC7|1|I|A|1969
6PC7|1|I|A|1970
6PC7|1|I|U|1971
6PC7|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2