J4_6PC8_002

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC8_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0891

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6PC8|1|I|G|297
6PC8|1|I|G|298
6PC8|1|I|A|299
6PC8|1|I|A|300
6PC8|1|I|G|301
*
6PC8|1|I|C|316
6PC8|1|I|G|317
6PC8|1|I|C|318
6PC8|1|I|G|319
*
6PC8|1|I|C|323
6PC8|1|I|A|324
6PC8|1|I|G|325
*
6PC8|1|I|C|337
6PC8|1|I|G|338
6PC8|1|I|U|339
6PC8|1|I|A|340
6PC8|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4