J4_6PCH_004

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAAGUAACGAUAAA*UC*GCUU*AGUGAAAUU

Length

30 nucleotides

Bulged bases

6PCH|1|I|G|1271, 6PCH|1|I|A|1272, 6PCH|1|I|U|1273, 6PCH|1|I|A|1275, 6PCH|1|I|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCH|1|I|A|1262
6PCH|1|I|U|1263
6PCH|1|I|A|1264
6PCH|1|I|A|1265
6PCH|1|I|G|1266
6PCH|1|I|U|1267
6PCH|1|I|A|1268
6PCH|1|I|A|1269
6PCH|1|I|C|1270
6PCH|1|I|G|1271
6PCH|1|I|A|1272
6PCH|1|I|U|1273
6PCH|1|I|A|1274
6PCH|1|I|A|1275
6PCH|1|I|A|1276
*
6PCH|1|I|U|1294
6PCH|1|I|C|1295
*
6PCH|1|I|G|1645
6PCH|1|I|C|1646
6PCH|1|I|U|1647
6PCH|1|I|U|1648
*
6PCH|1|I|A|2009
6PCH|1|I|G|2010
6PCH|1|I|U|2011
6PCH|1|I|G|2012
6PCH|1|I|A|2013
6PCH|1|I|A|2014
6PCH|1|I|A|2015
6PCH|1|I|U|2016
6PCH|1|I|U|2017

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4