J4_6PCH_009

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6PCH|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCH_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.14

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6PCH|1|I|C|1833
6PCH|1|I|U|1834
6PCH|1|I|2MG|1835
*
6PCH|1|I|C|1905
6PCH|1|I|G|1906
*
6PCH|1|I|C|1924
6PCH|1|I|C|1925
6PCH|1|I|U|1926
6PCH|1|I|A|1927
6PCH|1|I|A|1928
6PCH|1|I|G|1929
6PCH|1|I|G|1930
6PCH|1|I|U|1931
6PCH|1|I|A|1932
6PCH|1|I|G|1933
*
6PCH|1|I|C|1967
6PCH|1|I|G|1968
6PCH|1|I|A|1969
6PCH|1|I|A|1970
6PCH|1|I|U|1971
6PCH|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2