J4_6PCQ_005

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6PCQ|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCQ_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0761

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PCQ|1|I|G|1310
6PCQ|1|I|G|1311
6PCQ|1|I|U|1312
6PCQ|1|I|U|1313
6PCQ|1|I|C|1314
*
6PCQ|1|I|G|1338
6PCQ|1|I|G|1339
6PCQ|1|I|U|1340
6PCQ|1|I|G|1341
6PCQ|1|I|A|1342
6PCQ|1|I|G|1343
*
6PCQ|1|I|C|1404
6PCQ|1|I|U|1405
*
6PCQ|1|I|A|1597
6PCQ|1|I|A|1598
6PCQ|1|I|U|1599
6PCQ|1|I|C|1600
6PCQ|1|I|G|1601
6PCQ|1|I|U|1602
6PCQ|1|I|A|1603
6PCQ|1|I|C|1604

Current chains

Chain I

23S ribosomal RNA

Nearby chains