J4_6PCQ_009

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6PCQ|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCQ_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1466

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|C|1833
6PCQ|1|I|U|1834
6PCQ|1|I|2MG|1835
*
6PCQ|1|I|C|1905
6PCQ|1|I|G|1906
*
6PCQ|1|I|C|1924
6PCQ|1|I|C|1925
6PCQ|1|I|U|1926
6PCQ|1|I|A|1927
6PCQ|1|I|A|1928
6PCQ|1|I|G|1929
6PCQ|1|I|G|1930
6PCQ|1|I|U|1931
6PCQ|1|I|A|1932
6PCQ|1|I|G|1933
*
6PCQ|1|I|C|1967
6PCQ|1|I|G|1968
6PCQ|1|I|A|1969
6PCQ|1|I|A|1970
6PCQ|1|I|U|1971
6PCQ|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2