J4_6PCR_002

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCR_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0688

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6PCR|1|I|G|297
6PCR|1|I|G|298
6PCR|1|I|A|299
6PCR|1|I|A|300
6PCR|1|I|G|301
*
6PCR|1|I|C|316
6PCR|1|I|G|317
6PCR|1|I|C|318
6PCR|1|I|G|319
*
6PCR|1|I|C|323
6PCR|1|I|A|324
6PCR|1|I|G|325
*
6PCR|1|I|C|337
6PCR|1|I|G|338
6PCR|1|I|U|339
6PCR|1|I|A|340
6PCR|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4