J4_6PCR_005

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6PCR|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCR_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0715

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PCR|1|I|G|1310
6PCR|1|I|G|1311
6PCR|1|I|U|1312
6PCR|1|I|U|1313
6PCR|1|I|C|1314
*
6PCR|1|I|G|1338
6PCR|1|I|G|1339
6PCR|1|I|U|1340
6PCR|1|I|G|1341
6PCR|1|I|A|1342
6PCR|1|I|G|1343
*
6PCR|1|I|C|1404
6PCR|1|I|U|1405
*
6PCR|1|I|A|1597
6PCR|1|I|A|1598
6PCR|1|I|U|1599
6PCR|1|I|C|1600
6PCR|1|I|G|1601
6PCR|1|I|U|1602
6PCR|1|I|A|1603
6PCR|1|I|C|1604

Current chains

Chain I

23S ribosomal RNA

Nearby chains