J4_6PCS_002

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCS_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0769

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6PCS|1|I|G|297
6PCS|1|I|G|298
6PCS|1|I|A|299
6PCS|1|I|A|300
6PCS|1|I|G|301
*
6PCS|1|I|C|316
6PCS|1|I|G|317
6PCS|1|I|C|318
6PCS|1|I|G|319
*
6PCS|1|I|C|323
6PCS|1|I|A|324
6PCS|1|I|G|325
*
6PCS|1|I|C|337
6PCS|1|I|G|338
6PCS|1|I|U|339
6PCS|1|I|A|340
6PCS|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4