J4_6PCS_009

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6PCS|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCS_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1465

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6PCS|1|I|C|1833
6PCS|1|I|U|1834
6PCS|1|I|2MG|1835
*
6PCS|1|I|C|1905
6PCS|1|I|G|1906
*
6PCS|1|I|C|1924
6PCS|1|I|C|1925
6PCS|1|I|U|1926
6PCS|1|I|A|1927
6PCS|1|I|A|1928
6PCS|1|I|G|1929
6PCS|1|I|G|1930
6PCS|1|I|U|1931
6PCS|1|I|A|1932
6PCS|1|I|G|1933
*
6PCS|1|I|C|1967
6PCS|1|I|G|1968
6PCS|1|I|A|1969
6PCS|1|I|A|1970
6PCS|1|I|U|1971
6PCS|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2