3D structure

PDB id
6PCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 41q
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6PCT_002 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0739
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6PCT|1|I|G|297
6PCT|1|I|G|298
6PCT|1|I|A|299
6PCT|1|I|A|300
6PCT|1|I|G|301
*
6PCT|1|I|C|316
6PCT|1|I|G|317
6PCT|1|I|C|318
6PCT|1|I|G|319
*
6PCT|1|I|C|323
6PCT|1|I|A|324
6PCT|1|I|G|325
*
6PCT|1|I|C|337
6PCT|1|I|G|338
6PCT|1|I|U|339
6PCT|1|I|A|340
6PCT|1|I|C|341

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L4

Coloring options:


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