3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6PJ6_002 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0678
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6PJ6|1|I|G|297
6PJ6|1|I|G|298
6PJ6|1|I|A|299
6PJ6|1|I|A|300
6PJ6|1|I|G|301
*
6PJ6|1|I|C|316
6PJ6|1|I|G|317
6PJ6|1|I|C|318
6PJ6|1|I|G|319
*
6PJ6|1|I|C|323
6PJ6|1|I|A|324
6PJ6|1|I|G|325
*
6PJ6|1|I|C|337
6PJ6|1|I|G|338
6PJ6|1|I|U|339
6PJ6|1|I|A|340
6PJ6|1|I|C|341

Current chains

Chain I
23S rRNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain c
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4203 s