J4_6PJ6_002

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PJ6_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0678

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6PJ6|1|I|G|297
6PJ6|1|I|G|298
6PJ6|1|I|A|299
6PJ6|1|I|A|300
6PJ6|1|I|G|301
*
6PJ6|1|I|C|316
6PJ6|1|I|G|317
6PJ6|1|I|C|318
6PJ6|1|I|G|319
*
6PJ6|1|I|C|323
6PJ6|1|I|A|324
6PJ6|1|I|G|325
*
6PJ6|1|I|C|337
6PJ6|1|I|G|338
6PJ6|1|I|U|339
6PJ6|1|I|A|340
6PJ6|1|I|C|341

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24