J4_6PPF_002

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAG*CCGCC*GGA*UGUAG

Length

20 nucleotides

Bulged bases

6PPF|1|A|A|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|U|340
6PPF|1|A|G|341
6PPF|1|A|A|342
6PPF|1|A|A|343
6PPF|1|A|G|344
6PPF|1|A|A|345
6PPF|1|A|G|346
*
6PPF|1|A|C|359
6PPF|1|A|C|360
6PPF|1|A|G|361
6PPF|1|A|C|362
6PPF|1|A|C|363
*
6PPF|1|A|G|367
6PPF|1|A|G|368
6PPF|1|A|A|369
*
6PPF|1|A|U|381
6PPF|1|A|G|382
6PPF|1|A|U|383
6PPF|1|A|A|384
6PPF|1|A|G|385

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24