J4_6PPF_004

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAGA*UCC*GAUC*GG

Length

16 nucleotides

Bulged bases

6PPF|1|A|G|1311, 6PPF|1|A|A|1314, 6PPF|1|A|U|1692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|C|1310
6PPF|1|A|G|1311
6PPF|1|A|A|1312
6PPF|1|A|A|1313
6PPF|1|A|A|1314
6PPF|1|A|G|1315
6PPF|1|A|A|1316
*
6PPF|1|A|U|1332
6PPF|1|A|C|1333
6PPF|1|A|C|1334
*
6PPF|1|A|G|1690
6PPF|1|A|A|1691
6PPF|1|A|U|1692
6PPF|1|A|C|1693
*
6PPF|1|A|G|2038
6PPF|1|A|G|2039

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32