J4_6PPF_005

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUUC*GGUUAG*CC*GCCCGUACC

Length

23 nucleotides

Bulged bases

6PPF|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|G|1348
6PPF|1|A|G|1349
6PPF|1|A|U|1350
6PPF|1|A|U|1351
6PPF|1|A|U|1352
6PPF|1|A|C|1353
*
6PPF|1|A|G|1377
6PPF|1|A|G|1378
6PPF|1|A|U|1379
6PPF|1|A|U|1380
6PPF|1|A|A|1381
6PPF|1|A|G|1382
*
6PPF|1|A|C|1443
6PPF|1|A|C|1444
*
6PPF|1|A|G|1642
6PPF|1|A|C|1643
6PPF|1|A|C|1644
6PPF|1|A|C|1645
6PPF|1|A|G|1646
6PPF|1|A|U|1647
6PPF|1|A|A|1648
6PPF|1|A|C|1649
6PPF|1|A|C|1650

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34